bedgraphs_to_summarized_experiment: Bedgraph files to SummarizedExperiment

Description Usage Arguments Examples

Description

Creates a SummarizedExperiment from a list of bedgraph files for later analyses.

Usage

1
2
bedgraphs_to_summarized_experiment(directory_bedgraph, genome,
  column_accessibility = 4)

Arguments

directory_bedgraph

Directory containing a list of bedgraph files. First 3 columns correspond to coordinates. User can specify which column contains accessibility values (automatically column 4).

genome

The genome the accessibility data was generated from (e.g. mm10, hg19).

column_accessibility

The column containing the number of reads. Default is column 4.

Examples

1

stanleycai123/PRISM documentation built on May 5, 2019, 12:33 p.m.