bedgraphs_to_accessibility_matrix: Bedgraph files to accessibility matrix

Description Usage Arguments Examples

Description

Creates an accessibility matrix from a list of bedgraph files. First 3 columns are coordinates, remaining columns correspond to cells, and every row is a DNA sequence.

Usage

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bedgraphs_to_accessibility_matrix(directory_bedgraph,
  column_accessibility = 4)

Arguments

directory_bedgraph

Directory containing a list of bedgraph files. First 3 columns correspond to coordinates. User can specify which column contains accessibility values (automatically column 4).

column_accessibility

The column containing the number of reads. Default is column 4.

Examples

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stanleycai123/PRISM documentation built on May 5, 2019, 12:33 p.m.