get_background_peaks: Background peak selection

Description Usage Arguments Examples

Description

Selects background peaks to control for technical biases associated with GC content and mean accessibility. Background peaks are drawn from non-TF bound peaks and matched peak-for-peak for GC content, and matrix-for-matrix for mean accessibility.

Usage

1
get_background_peaks(scATACseq_experiment, ChIPseq_experiment)

Arguments

scATACseq_experiment

A SummarizedExperiment with scATACseq data.

ChIPseq_experiment

A ChIPseq matrix.

Examples

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stanleycai123/PRISM documentation built on May 5, 2019, 12:33 p.m.