matrix_to_summarized_experiment: Creates a Summarized Experiment from an accessibility matrix

Description Usage Arguments Examples

Description

Converts an accessibility matrix into a SummarizedExperiment file.

Usage

1
matrix_to_summarized_experiment(accessibility_matrix, genome)

Arguments

accessibility_matrix

A matrix with first 3 columns containing coordinates. Remaining columns correspond to cells. Rows correspond to DNA sequences. Accessibility data should be binarized.

genome

The genome the accessibility data was generated from (e.g. mm10, hg19).

Examples

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stanleycai123/PRISM documentation built on May 5, 2019, 12:33 p.m.