Man pages for stefpeschel/NetCoMi
Network Construction and Comparison for Microbiome Data
| calcGCD | Graphlet Correlation Distance (GCD) |
| calcGCM | Graphlet Correlation Matrix (GCM) |
| cclasso | CCLasso: Correlation inference of Composition data through... |
| colToTransp | Adding transparency to a color |
| createAssoPerm | Create and store association matrices for permuted data |
| diffnet | Constructing Differential Networks for Microbiome Data |
| dot-boottest | Bootstrap Procedure for Testing Statistical Significance of... |
| dot-calcAssociation | Compute associations between taxa |
| dot-calcProps | Calculate network properties |
| dot-getVecNames | Function for Generating Vector Names |
| dot-permTestDiffAsso | Permutation Tests for Determining Differential Associations |
| editLabels | Edit labels |
| gcoda | gCoda: conditional dependence network inference for... |
| installNetCoMiPacks | Install all packages used within NetCoMi |
| multAdjust | Multiple testing adjustment |
| netAnalyze | Microbiome Network Analysis |
| NetCoMi-package | NetCoMi: Network Comparison for Microbial Compositional Data |
| netCompare | Group Comparison of Network Properties |
| netConstruct | Constructing Networks for Microbiome Data |
| plot.diffnet | Plot method for objects of class diffnet |
| plotHeat | Create a heatmap with p-values |
| plot.microNetProps | Plot Method for microNetProps Objects |
| print.GCD | Print method for GCD objects |
| renameTaxa | Rename taxa |
| summarize.microNetComp | Summary Method for Objects of Class microNetComp |
| summarize.microNetProps | Summary Method for Objects of Class microNetProps |
| testGCM | Test GCM(s) for statistical significance |
