.calcProps | R Documentation |
Calculates network properties for a given adjacency matrix
.calcProps(
adjaMat,
dissMat,
assoMat,
avDissIgnoreInf,
sPathNorm,
sPathAlgo,
normNatConnect,
weighted,
isempty,
clustMethod,
clustPar,
weightClustCoef,
hubPar,
hubQuant,
lnormFit,
connectivity,
graphlet,
orbits,
weightDeg,
normDeg,
normBetw,
normClose,
normEigen,
centrLCC,
jaccard = FALSE,
jaccQuant = NULL,
verbose = 0
)
adjaMat |
adjacency matrix |
dissMat |
dissimilarity matrix |
assoMat |
association matrix |
avDissIgnoreInf |
logical indicating whether to ignore infinities when
calculating the average dissimilarity. If |
sPathNorm |
logical. If |
sPathAlgo |
character indicating the algorithm used for computing
the shortest paths between all node pairs. |
normNatConnect |
logical. If |
weighted |
logical indicating whether the network is weighted. |
isempty |
logical indicating whether the network is empty. |
clustMethod |
character indicating the clustering algorithm. Possible
values are |
clustPar |
list with parameters passed to the clustering functions.
If hierarchical clustering is used, the parameters are passed to
|
weightClustCoef |
logical indicating whether (global) clustering
coefficient should be weighted ( |
hubPar |
character vector with one or more elements (centrality
measures) used for identifying hub nodes. Possible values are |
hubQuant |
quantile used for determining hub nodes. Defaults to 0.95. |
lnormFit |
hubs are nodes with a centrality value above the 95%
quantile of the fitted log-normal distribution (if |
connectivity |
logical. If |
graphlet |
logical. If |
orbits |
numeric vector with integers from 0 to 14 defining the graphlet orbits. |
weightDeg |
logical. If |
normDeg, normBetw, normClose, normEigen |
logical. If |
centrLCC |
logical indicating whether to compute centralities only
for the largest connected component (LCC). If |
jaccard |
shall the Jaccard index be calculated? |
jaccQuant |
quantile for the Jaccard index |
verbose |
integer indicating the level of verbosity. Possible values:
|
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