dot-calcAssociation: Compute associations between taxa

In stefpeschel/NetCoMi: Network Construction and Comparison for Microbiome Data

Compute associations between taxa

Description

Computes associations between taxa or distances between subjects for a given read count matrix

Usage

.calcAssociation(countMat, measure, measurePar, verbose)

Arguments

countMat	numeric read count matrix, where rows are samples and columns are OTUs/taxa.
measure	character giving the measure used for estimating associations or dissimilarities
measurePar	optional list with parameters passed to the function for estimating associations/dissimilarities
verbose	if TRUE, progress messages are returned.

stefpeschel/NetCoMi documentation built on Feb. 4, 2024, 8:20 a.m.