Cpp_FindAllMarkers-methods: description of function Cpp_FindAllMarkers

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

Use Seurat's FindAllMarkers function

Usage

Cpp_FindAllMarkers(
  x,
  condition,
  logfc.threshold = 1,
  minPct = 0.1,
  onlyPos = FALSE
)

Arguments

x	the BioData object
condition	The grouping you wat to analyze
logfc.threshold	seurat option used for speed up (default = 1)
minPct	only test genes that are detected in a minimum fraction of min.pct cells in either of the two populations. Meant to speed up the function
onlyPos	check only higher expression (default FALSE)

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.