API for stela2502/BioData
The package allows to annotate a numeric data.table with col and row data

Global functions
'bestGrouping,BioData-method Man page
'rfCluster_col,BioData-method Man page
'rfCluster_row,BioData-method Man page
.onAttach Source code
BioData Man page
CellCycle Man page
CellCycleGenes Man page
CodonHeatmap Man page
CodonHeatmap,tRNAMINT-method Man page
Cpp_FindAllMarkers Man page
Cpp_FindAllMarkers,BioData-method Man page
CreateBin Man page
CreateBin,BioData-method Man page
DimReduction Man page
DimReduction,BioData-method Man page
Epigenetic Man page
Get_PartialTest_Obj Man page
Get_PartialTest_Obj,BioData-method Man page
H5Anno2df Man page
H5Anno2df,BioData-method Man page
H5Anno2df,cellexalvrR-method Man page
IdentifyMarkerGenes Man page
IdentifyMarkerGenes,BioData-method Man page
Make3D4obj Man page
Make3D4obj,BioData-method Man page
MicroArray Man page
PartialTests Man page
PartialTests,BioData-method Man page
SQLite_ExpressionSummary Man page
SQLite_ExpressionSummary,BioData-method Man page
SQLite_SampleSummary Man page
SQLite_SampleSummary,BioData-method Man page
SeuratVarGenes Man page
SeuratVarGenes,BioData-method Man page
Seurat_FindAllMarkers Man page
Seurat_FindAllMarkers,BioData-method Man page
SingleCells Man page
Split4Geo Man page
Split4Geo,BioData-method Man page
TestData Man page
ZScore Source code
addCellCyclePhase Man page
addCellCyclePhase,BioData-method Man page
add_to_stat Man page
add_to_stat,BioData-method Man page
as_BioData Man page Man page
as_BioData,Seurat-method Man page
as_BioData,cellexalvrR-method Man page
as_BioData,character-method Man page
as_BioData,data.frame-method Man page
as_BioData,list-method Man page
as_BioData,matrix-method Man page
as_Seurat Man page
as_Seurat,BioData-method Man page
as_cellexalvr Man page Man page
as_cellexalvr,BioData-method Man page
auto_order_grouping Man page
auto_order_grouping,BioData-method Man page
auto_reorder_grouping Man page
auto_reorder_grouping,BioData-method Man page
bestGrouping Man page
changeNames Man page
changeNames,BioData-method Man page
cleanUpGroup Man page
cleanUpGroup,BioData-method Man page
clusters Man page
clusters,BioData-method Man page
clusters_gene Man page
clusters_gene,BioData-method Man page
collaps Man page
collaps,BioData-method Man page
collapse Man page
collapse,BioData-method Man page
collapse2codons Man page
collapse2codons,tRNAMINT-method Man page
colnames Man page
colnames,BioData-method Man page
colors_4 Man page
colors_4,BioData-method Man page
combineGroupings Man page
combineGroupings,BioData-method Man page
complexHeatmap Man page
complexHeatmap,BioData-method Man page
convert_to Man page
convert_to,BioData-method Man page
copy_grouping Man page
copy_grouping,BioData-method Man page
copy_mds_objects Man page
copy_mds_objects,BioData-method Man page
createDuplicates Man page
createDuplicates,BioData-method Man page
createRFgrouping_col Man page
createRFgrouping_col,BioData-method Man page
createRFgrouping_row Man page
createRFgrouping_row,BioData-method Man page
createStats Man page
createStats,NGSexpressionSet-method Man page
dataframe2biodata Man page
dataframe2biodata,BioData-method Man page
defineGOIs Man page
defineGOIs,cellexalvr-method Man page
defineHeatmapColors Man page
defineHeatmapColors,BioData-method Man page
define_grouping Man page
define_grouping,BioData-method Man page
export.data Man page
export.data,BioData-method Man page
extractCodonInformation Man page
extractCodonInformation,tRNAMINT-method Man page
filterGenes Man page
filterGenes,BioData-method Man page
findDuplicates Man page
findDuplicates,BioData-method Man page
findOverlapWithCells Man page
findOverlapWithCells,BioData-method Man page
fit_4_rf Man page
fit_4_rf,BioData-method Man page
force.numeric Man page
force.numeric,BioData-method Man page
get.genes.cor.to Man page
get.genes.cor.to,BioData-method Man page
getEnsembl Man page
getEnsembl,BioData-method Man page
getGeneInfo Man page
getGeneInfo,BioData-method Man page
getGenesExpressedHigherThanExpected Man page
getGenesExpressedHigherThanExpected,BioData-method Man page
getSymbols Man page
getSymbols,BioData-method Man page
getTopSigGenes Man page
getTopSigGenes,BioData-method Man page
group_intersect_order Man page
group_intersect_order,BioData-method Man page
groups_boxplot Man page
groups_boxplot,BioData-method Man page
heatPlotTimelines2D Man page
heatPlotTimelines2D,BioData-method Man page
heatmap.3 Source code
human.CellSurface Man page
human.tfs Man page
loadObj Man page
loadObj,BioData-method Man page
load_CellexalVR_selection Man page
load_CellexalVR_selection,BioData-method Man page
load_database Source code
logThis Man page
logThis,BioData-method Man page
mds Man page
mds,BioData-method Man page
merge Man page
merge,BioData-method Man page
merge_cells Man page
merge_cells,BioData-method Man page
mouse.CellSurface Man page
mouse.tfs Man page
normalize Man page
normalize,BioData-method Man page
normalize,MicroArray-method Man page
normalize,SingleCells-method Man page
normalize_R_buggy Man page
normalize_R_buggy,BioData-method Man page
ontologyLogPage Man page
ontologyLogPage,BioData-method Man page
plot2col_barplot Man page
plot2col_barplot,BioData-method Man page
plotCodonUsage Man page
plotCodonUsage,BioData-method Man page
plotLegend Man page
plotLegend,BioData-method Man page
plotMDS Man page
plotMDS,BioData-method Man page
plot_velocyto Man page
plot_velocyto,BioData-method Man page
positivesOnly Man page
positivesOnly,BioData-method Man page
preprocess Man page
preprocess,BioData-method Man page
pseudotimeTest Man page
pseudotimeTest,BioData-method Man page
pseudotimeTest3D Man page
pseudotimeTest3D,BioData-method Man page
pwd Man page
quality_of_fit Man page
quality_of_fit,BioData-method Man page
readLoomFile Man page
readLoomFile,BioData-method Man page
reduceTo Man page
reduceTo,BioData-method Man page
removeNeg Man page
removeNeg,BioData-method Man page
renew Man page
renew,BioData-method Man page
reorder.genes Man page
reorder.genes,BioData-method Man page
reorder.samples Man page
reorder.samples,BioData-method Man page Man page
reorder_grouping Man page
reorder_grouping,BioData-method Man page
reorder_on_wilcox_results Man page
reorder_on_wilcox_results,BioData-method Man page
rfCluster_col Man page
rfCluster_row Man page
rmdLink Man page
rmdLink,BioData-method Man page
rownames Man page
rownames,BioData-method Man page
runStats_inThread Man page
runStats_inThread,BioData-method Man page
sampleCodonUsage Man page
sampleCodonUsage,tRNAMINT-method Man page
saveObj Man page
saveObj,ANY-method Man page
show Man page
show,BioData-method Man page
simpleAnova Man page
simpleAnova,BioData-method Man page
stat_table Man page
stat_table,tRNAMINT-method Man page
tRF.typeHeatmap Man page
tRF.typeHeatmap,tRNAMINT-method Man page
tRNAMINT Man page
tRNA_stats Man page
tRNA_stats,tRNAMINT-method Man page
transpose Man page
transpose,02_transpose-method Man page
useInbuiltGOIlists Man page
useInbuiltGOIlists,BioData-method Man page
vioplot Man page
vioplot,Rscexv-method Man page
z.score Man page
z.score,BioData-method Man page
stela2502/BioData documentation built on May 20, 2020, 9:48 p.m.