plot the PCR heatmap using the heatmap.3 function included in this package
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x |
the BioData object |
ofile |
the outfile to create in the x$outpath folder |
colGroups |
columns in the samples table to use to order the data (first == order) |
rowGroups |
rows in the annotation table to use to color the heatmap rows (first == order) |
colColors |
a named list of column color vectors |
rowColors |
a named list of row color vectors |
pdf |
export as pdf (default = FALSE) |
subpath |
the subpath for the plots (default = ”) |
main |
the picture title (default ”) |
heapmapCols |
the color function to calculate the heatmap colours ( default function (x) c("darkgrey",bluered(x)) ) |
brks |
how many breaks should the expression value color key have (default=10) |
X11type |
sometimes needed for compatibility (default = 'cairo') |
green |
if in SingleCell mode normalization losses get a -1 and can be displayed as green or black in the default coloring (default green=F => black) |
noBreaks |
show linear data colors instead of bined ones; impossible if green=TRUE (default =FALSE) |
family |
the grDevices font family (default 'Helvetica') |
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