findOverlapWithCells-methods: description of function findOverlapWithCells

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

PCA and kmeans based similarity finder

Arguments

x	the BioData obejct
cells	the cells to find similarity for (do not take too view)
cname	the column name to store the similarity values in default="SimilarityToTargetCells"
iter	the amount of kmean runs for this analysis default=100
group.n	the amount of kmeans groups to be created

Details

Based on a PCA representation of the BioData object this function runs 'iter' kmeans clusterings and collects the mean fraction of 'cells' overlapping with each other cell.

The function is returung this fraction of overlap for each cells and the higher the values the better the overlap.

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.