as_cellexalvr-methods: description of function as_cellexalvr

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

export a BioData as cellexalVR folder that can be loaded into the CellexalVR VR platform

Usage

as_cellexalvr(x, cellInfo, groups = NULL, linear = NULL)

Arguments

x	The BioData object
outpath	the outpath for the VR data
specie	which specie the data comes from (mouse or human)
meta.cell.groups	which BioData samples groups should become available in the Attributes coloring mode in VR
meta.genes.groups	at the moment saver to leave NULL
userGroups	which sample columns should become accessible as userGroupings in VR to re-color the graphs
minGene	VR has a problem with 0 level genes, hence these need to be removes, but you can also set a higher cut off (default=1)

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.