This function uses the rfCluster_col function to order median collapsed data values. This RF order is then re-ordered twice using hclust 'ward.D2' and the final ordering is forced onto the original grouping.
1 2 3 4 5 6 7 | auto_order_grouping(
x,
group,
settings = list(A = "lsens2017-3-2", t = "01:00:00", p = "dell", n = 1, N = 1),
k = 5,
colapseBy = "median"
)
|
x |
The BioData object |
group |
the sample grouping that should become reordered (min 15 groups) |
settings |
a list of slurm settings default list( 'A' = 'lsens2017-3-2' , 't'= '01:00:00', 'p' = 'dell', 'n' = 1, 'N' = 1) |
k |
how many groups to put into one super group (default 5) |
colapseBy |
which method to collapse the data by (default 'median') see function collaps |
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