tRNA_stats-methods: description of function tRNA_stats

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

This function calculates the tRNA statistics as described in XYZ

Arguments

x	the tRNAMINT object
acol	the statistics will be calculated for every entry in this column
scol	column containing the sample grouping (two groups are required)
norm.type	a tRNAMINT object normally contains 3 or more different norm datasets per sample. This value is used as a patter to select one normalization mode.
codon	the tRNAMINT object can extract codon information from the fragments using the extractCodonInformation() function. If you give one codon column name here (x$usedObj$Codons) the stats will be calculated for this codon only
fun	multiple fragments are summed up for this analysis; this is the summing function: default=function(x) sum(x, na.rm=TRUE)

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.