runStats_inThread-methods: description of function runStats_inThread

Description Usage Arguments

Description

create a script that calculates the stats in a new thread; run the script and collect the data after the script has finished

Usage

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runStats_inThread(
  x,
  condition,
  files = F,
  A = NULL,
  B = NULL,
  covariates = NULL,
  form = NULL,
  settings = NULL
)

Arguments

x

the BioData object

condition

the samples column to run stats for

files

whether to print the stats output to file ( default =F - depricated)

A

if not all conditions should be used condition A

B

if not all conditions should be used condition B

covariates

should covariates be used - name them here

form

a specific formualr to use? State it here

settings

SLURM setting like list( A = 'lsens2018.3.3', T='00:20:00', n=1, N=1 ) (default NULL)


stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.