plotCodonUsage-methods: description of function plotCodonUsage

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

plots the codon usage for one sample The function uses sampleCodonUsage() to extract this information from for the sample

Arguments

x	the tRNAMINT object
sname	the sample you want to depict
codons	the codon list to use default=all
min_reads	use all tRNA fragments with at least that many reads for the sample default=1
tRF.reliability	MINT reports an exclusive and ambiguous set of tRNA fragments state one of them or use both default=NULL == both
tRF.type	MINT reports different types of tRNA fragments (3'-half, 5'-half, ...) default=NULL == use all
main	the figure title default="Pie Chart"
color	a vector of color information to use for the codons default= rainbow
fname	the filename to plot to as png (default use x11 as plotting device)

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.