plot_velocyto-methods: description of function plot_velocyto

In stela2502/BioData: The package allows to annotate a numeric data.table with col and row data

Description

use a velocyto input and plot the velocities on one of the MDS projections

Usage

plot_velocyto(
  x,
  velo,
  translation,
  group,
  mds_name = "Expression PCA",
  ret = list(),
  ofile = NULL,
  ...
)

Arguments

x	The BioData object
velo	the velocyto read reads
translation	a two columns table with 'velo' and 'BioData' sample names (translation table)
group	the group to be plotted
mds_name	the mds to plot on (default "Expression PCA")
ret	an optional list gotten from the last plot_velocyto run (default=list())
ofile	an optional outfile for the figure (pdf) default= NULL
...	unused at the moment

Value

a list of velocyto.R results (reusable)

stela2502/BioData documentation built on Feb. 23, 2022, 5:47 a.m.