chimeraviz-internals-fusions_to_link_data: Create link data for RCircos from the given fusions.

In stianlagstad/chimeraviz: Visualization tools for gene fusions

Create link data for RCircos from the given fusions.

Description

This function takes a list of Fusion objects and creates a data frame in the format that RCircos::RCircos.Link.Plot() expects for link data.

Usage

.fusions_to_link_data(fusion_list, min_link_width = 1, max_link_widt = 10)

Arguments

fusion_list	A list of Fusion objects.
min_link_width	The minimum link line width. Default = 1
max_link_widt	The maximum link line width. Default = 10

Value

A data frame with fusion link data compatible with RCircos::RCircos.Link.Plot()

# @examples # Apparently examples shouldn't be set on private functions defuse833ke <- system.file("extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- import_defuse(defuse833ke, "hg19", 3) linkData <- chimeraviz::.fusions_to_link_data(fusions) # This linkData can be used with RCircos::RCircos.Link.Plot()

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.