partner_gene_junction_sequence: Get the junction sequence from a PartnerGene object

In stianlagstad/chimeraviz: Visualization tools for gene fusions

Get the junction sequence from a PartnerGene object

Description

This getter retrieves the junction sequence from a PartnerGene object

Usage

partner_gene_junction_sequence(x)

## S4 method for signature 'PartnerGene'
partner_gene_junction_sequence(x)

Arguments

x	The PartnerGene object you wish to retrieve the junction sequence for.

Value

The upstream fusion partner gene junction sequence.

Examples

# Load data
defuseData <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuseData, "hg19", 1)
fusion <- fusions[[1]]
# Get the junction sequence from the upstream fusion partner gene
partner_gene_junction_sequence(upstream_partner_gene(fusion))

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.