create_fusion_report: Create a Fusion Report

In stianlagstad/chimeraviz: Visualization tools for gene fusions

Create a Fusion Report

Description

This function will create a html report with an overplot and a sortable, searchable table with the fusion data.

Usage

create_fusion_report(fusions, output_filename, quiet = TRUE)

Arguments

fusions	A list of Fusion objects.
output_filename	Output html-file filename.
quiet	Parameter passed to rmarkdown::render() to toggle its output.

Value

Creates a html report with an overplot and a sortable, searchable table with the fusion data.

Examples

# Load data
defuse833ke <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 3)
# Temporary file to store the report
random_filename <- paste0(
  paste0(sample(LETTERS, 5, replace = TRUE), collapse=''),
  ".png"
)
# Create report
create_fusion_report(fusions, random_filename)
# Delete the file
file.remove(random_filename)

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.