get_fusion_by_gene_name: Find fusions that includes the given gene.

In stianlagstad/chimeraviz: Visualization tools for gene fusions

Find fusions that includes the given gene.

Description

Helper function to retrieve the Fusion objects that has geneName as one of the partner genes.

Usage

get_fusion_by_gene_name(fusion_list, gene_name)

Arguments

fusion_list	A list of Fusion objects.
gene_name	The gene name we're looking for.

Details

Note: get_fusion_by_gene_name(fusionList, "MT") will match both MT-ND5 and MT-ND4.

Value

A list of Fusion objects.

Examples

defuse833ke <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 1)
length(get_fusion_by_gene_name(fusions, "RCC1"))
# [1] 1

stianlagstad/chimeraviz documentation built on Dec. 3, 2023, 8:11 p.m.