Man pages for stiv1n/CYCLeR
CircRNA transcriptome assembly tool
| combine_two_BSJ_tables | combine BSJs |
| filter_bam | BAM file filter |
| find_depleted_features | CircRNA feature selection |
| get_seqs | Extract sequence per exon bin |
| make_BSJ_gr | Convert BSJ string to GRanges obejct |
| make_BSJ_sg | Preparation of the BSJ-specific splice graphs |
| merge_fasta | Merging 2 'DNAStringSets' |
| merge_qics | Merging 2 assemblies |
| overlap_SG_BSJ | Overlap of BSJ and a splice graph |
| parse_files | Parse BSJ input |
| plotRanges2 | Plot ranges |
| prep_circular_sg | Preparing circular splice graph features |
| prep_output_gtf | Creation of GTF based on CYCLeR results |
| process_BSJs | Process BSJs |
| recount_features | Re-count of the reads per exon bin |
| RPKM_calc | RPKM calculation for the genomic features |
| transcripts_per_sample | Transcript assembly |
