overlap_SG_BSJ: Overlap of BSJ and a splice graph
In stiv1n/CYCLeR: CircRNA transcriptome assembly tool
View source: R/cycler_fuctions.R
overlap_SG_BSJ R Documentation
Overlap of BSJ and a splice graph
Description
Creates a disjointed set of exons based on a SGSeq obejct and a BSJ GRanges object
Usage
overlap_SG_BSJ(sgfc_pred, BSJ_gr, sg_annot)
Arguments
sgfc_pred
SGSeq prediction object
BSJ_gr
a GRange of BSJ cooredinates
sg_annot
SGSeq prediction object with annotation info
Details
Creates a disjointed set of exons based on a SGSeq obejct and a BSJ GRanges object.
The function keeps the SGSeq metadata
Value
SGSeq with disjoint exon bins
Author(s)
Stefan Stefanov
stiv1n/CYCLeR documentation built on Sept. 15, 2022, 4:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/cycler_fuctions.R
| overlap_SG_BSJ | R Documentation |
Overlap of BSJ and a splice graph
Description
Creates a disjointed set of exons based on a SGSeq obejct and a BSJ GRanges object
Usage
overlap_SG_BSJ(sgfc_pred, BSJ_gr, sg_annot)
Arguments
sgfc_pred |
|
BSJ_gr |
a GRange of BSJ cooredinates |
sg_annot |
|
Details
Creates a disjointed set of exons based on a SGSeq obejct and a BSJ GRanges object.
The function keeps the SGSeq metadata
Value
SGSeq with disjoint exon bins
Author(s)
Stefan Stefanov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.