prep_circular_sg: Preparing circular splice graph features
In stiv1n/CYCLeR: CircRNA transcriptome assembly tool
View source: R/cycler_fuctions.R
prep_circular_sg R Documentation
Preparing circular splice graph features
Description
Preparing circular splice graph features
Preparing circular splice graph features
Usage
prep_circular_sg(full_sg, full_fc, sgfc_pred, bs_genome, BSJ_gr, th = 15)
Arguments
full_sg
SGranges object supplying feature info
full_fc
count matrix corresponding to the features
sgfc_pred
SGFC from the SGSeq feature detection
bs_genome
BSGenome object used for extracting the sequences
BSJ_gr
GRange object of BSJ coordinates
th
minimum number of reads limiting exon selection
Value
SummarizedExperiment object with info on the circular splice graph features
Author(s)
Stefan Stefanov
stiv1n/CYCLeR documentation built on Sept. 15, 2022, 4:39 p.m.
R Package Documentation
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View source: R/cycler_fuctions.R
| prep_circular_sg | R Documentation |
Preparing circular splice graph features
Description
Preparing circular splice graph features Preparing circular splice graph features
Usage
prep_circular_sg(full_sg, full_fc, sgfc_pred, bs_genome, BSJ_gr, th = 15)
Arguments
full_sg |
|
full_fc |
count matrix corresponding to the features |
sgfc_pred |
|
bs_genome |
|
BSJ_gr |
|
th |
minimum number of reads limiting exon selection |
Value
SummarizedExperiment object with info on the circular splice graph features
Author(s)
Stefan Stefanov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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