recount_features: Re-count of the reads per exon bin

In stiv1n/CYCLeR: CircRNA transcriptome assembly tool

Re-count of the reads per exon bin

Description

A wrapper function for Rsubread

Usage

recount_features(full_sg, sample_table, paired_end = T)

Arguments

full_sg	a SGSeq object of exon bins
sample_table	sample table formatted according to the manual, Must contain “sample_name” “treatment” “file_bam” “lib_size” “read_len”; NB the values in column “treatment” can only be “control” and “enriched”
paired_end	a binary for pair-end info

Details

This function performs requantification of the exon bins with specifically selected parameters

Value

BAMFileList object with info on the trimmed files

Author(s)

Stefan Stefanov

stiv1n/CYCLeR documentation built on Sept. 15, 2022, 4:39 p.m.