process_BSJs: Process BSJs

In stiv1n/CYCLeR: CircRNA transcriptome assembly tool

Process BSJs

Description

process the BSJ table and select high confidence BSJs

Usage

process_BSJs(cdf, sample_table)

Arguments

cdf	tibble produced by parse_files
sample_table	sample table formatted according to the manual, Must contain “sample_name” “treatment” “file_bam” “lib_size” “read_len”; NB the values in column “treatment” can only be “control” and “enriched”
file_path	string object with file path, clould be an empty string

Details

Filters BSJ based on comparison of the average CPM values of BSJs

Value

Tibble object with combined filtered BSJ coordinate and number of junction spanning reads across sample.

Author(s)

Stefan Stefanov

stiv1n/CYCLeR documentation built on Sept. 15, 2022, 4:39 p.m.