parse_files: Parse BSJ input

In stiv1n/CYCLeR: CircRNA transcriptome assembly tool

Parse BSJ input

Description

Parse BSJ files from CIRI, CIRCexplorer2 or a TSV file

Usage

parse_files(file_list, file_path, input_type)

Arguments

file_list	list with file names
file_path	string object with file path, clould be an empty string
input_type	CIRI for CIRI2 input, CE for CIRCexplorer2 input and tsv for TSV formatted input

Details

This processes BSJ prediction files and prepares them for the next step of the pipeline. input_type is essential for the correct parsing of the files.

Value

Tibble object with combined BSJ coordinate and number of junction spanning reads across sample

Author(s)

Stefan Stefanov

stiv1n/CYCLeR documentation built on Sept. 15, 2022, 4:39 p.m.