Man pages for susjoh/wildsim
Tools for simulating wild populations for Genome-wide Association Studies.

createKinshipMatrixcreateKinshipMatrix: create a kinship matrix using ibs in R
CumuPosCumuPos: Determine the cumulative positions of...
estimateGenomicHeritabilityestimateGenomicHeritability: create a kinship matrix using...
estimateLDestimateLD: Estimated LD (r2) between adjacent markers.
estimateQTLEffectsestimateQTLEffects: estimate variance attributed to simulated...
FullGwasPlotFullGwasPlot: Create a Manhattan plot from a GenABEL...
FullGwasSummaryFullSummary: Create a Manhatten and P-P plots and return top...
FullPpPlotFullPpPlot: Create a P-P plot from a GenABEL...
helloHello, World!
multiplotmultiplot: Multiple plot function. # ggplot objects can be...
parseParamFileparseParamFile: Parse the parameter file.
parseQMSimparseQMSim: Parse files in a QMSIM directory. This function...
RunGCTARunGCTA: Run GCTA
RunPLINKRunPLINK: Run PLINK
RunQMSimRunQMSim: Run QMSim
RunSEDRunSED: Run sed in Windows
susjoh/wildsim documentation built on Jan. 22, 2018, 9:05 a.m.