FullGwasSummary: FullSummary: Create a Manhatten and P-P plots and return top...

Description Usage Arguments

Description

FullSummary: Create a Manhatten and P-P plots and return top results from a GenABEL scan.gwaa.object.

Usage

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FullGwasSummary(scan.gwaa.object, corrected = FALSE, bonf = F,
  qtl.ids = NULL)

Arguments

scan.gwaa.object

GenABEL scan.gwaa.object object containing GWAS results.

corrected

logical. If true, GWAS results will be reported after correction for genomic control.

bonf

numeric. Threshold P-value for genome-wide significance. If not defined, will be calculated using a Bonferroni correction.

qtl.ids

vector. Vector of SNP names for QTL loci (if they are included in the dataset). If specified, their positions will be highlighted.


susjoh/wildsim documentation built on May 29, 2019, 9:51 a.m.