FullGwasPlot: Create a Manhattan plot from a GenABEL scan.gwaa.object.
1 2 | FullGwasPlot(scan.gwaa.object, corrected = FALSE, bonf = NULL,
lambda = NULL, qtl.ids = NULL)
|
scan.gwaa.object |
GenABEL scan.gwaa.object object containing GWAS results. |
corrected |
logical. If true, GWAS results will be reported after correction for genomic control. |
bonf |
numeric. Threshold P-value for genome-wide significance. If not defined, will be calculated using a Bonferroni correction. |
lambda |
numeric. Genomic control parameter, to be specified if a different value from the scan.gwaa.object is to be used. |
qtl.ids |
vector. Vector of SNP names for QTL loci (if they are included in the dataset). If specified, their positions will be highlighted. |
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