FullGwasPlot: FullGwasPlot: Create a Manhattan plot from a GenABEL...
In susjoh/wildsim: Tools for simulating wild populations for Genome-wide Association Studies.
Description
FullGwasPlot: Create a Manhattan plot from a GenABEL scan.gwaa.object.
Usage
1
2
FullGwasPlot(scan.gwaa.object, corrected = FALSE, bonf = NULL,
lambda = NULL, qtl.ids = NULL)
Arguments
scan.gwaa.object
GenABEL scan.gwaa.object object containing GWAS
results.
corrected
logical. If true, GWAS results will be reported after
correction for genomic control.
bonf
numeric. Threshold P-value for genome-wide significance. If not
defined, will be calculated using a Bonferroni correction.
lambda
numeric. Genomic control parameter, to be specified if a
different value from the scan.gwaa.object is to be used.
qtl.ids
vector. Vector of SNP names for QTL loci (if they are included
in the dataset). If specified, their positions will be highlighted.
susjoh/wildsim documentation built on May 29, 2019, 9:51 a.m.
R Package Documentation
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Description
FullGwasPlot: Create a Manhattan plot from a GenABEL scan.gwaa.object.
Usage
1 2 | FullGwasPlot(scan.gwaa.object, corrected = FALSE, bonf = NULL,
lambda = NULL, qtl.ids = NULL)
|
Arguments
scan.gwaa.object |
GenABEL scan.gwaa.object object containing GWAS results. |
corrected |
logical. If true, GWAS results will be reported after correction for genomic control. |
bonf |
numeric. Threshold P-value for genome-wide significance. If not defined, will be calculated using a Bonferroni correction. |
lambda |
numeric. Genomic control parameter, to be specified if a different value from the scan.gwaa.object is to be used. |
qtl.ids |
vector. Vector of SNP names for QTL loci (if they are included in the dataset). If specified, their positions will be highlighted. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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