parseQMSim: parseQMSim: Parse files in a QMSIM directory. This function...

In susjoh/wildsim: Tools for simulating wild populations for Genome-wide Association Studies.

Description

parseQMSim: Parse files in a QMSIM directory. This function converst the simulated data to GenABEL and PLINK format files and creates relatedness matrices for the full dataset using GCTA (optional)

Usage

parseQMSim(markerfile = "p1_mrk_001.txt", phenofile = "p1_data_001.txt",
  createGCTA = T, createQTLMerged = T)

Arguments

markerfile	string. Default is "p1_mrk_001.txt".
phenofile	string. Default is "p1_data_001.txt"
createGCTA	boolean. Default TRUE. Creates a relatedness matrix from the full data set.
createQTLMerged	boolean. Default TRUE. Creates files with ("_merged") and without the simulated quantitative trait loci.

susjoh/wildsim documentation built on May 29, 2019, 9:51 a.m.