estimateLD: estimateLD: Estimated LD (r2) between adjacent markers.

Description Usage Arguments

Description

estimateLD: Estimated LD (r2) between adjacent markers.

Usage

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estimateLD(markerfile, snpvec = NULL, idvec = NULL, full.results = F,
  ld.window.kb = 1000, outfile = NULL)

Arguments

markerfile

Path to markerfile

snpvec

Vector of SNPs to include (all others excluded). Optional

idvec

Vector of IDs to include (all others excluded). Optional

full.results

Default FALSE. If TRUE, prints the table of LD measures between adjacent loci.

ld.window.kb

Default 1000. Maximum kb distance between which to measure LD. Higher values will ensure all loci are captured, but will take longer.


susjoh/wildsim documentation built on May 29, 2019, 9:51 a.m.