estimateLD: Estimated LD (r2) between adjacent markers.
1 2 | estimateLD(markerfile, snpvec = NULL, idvec = NULL, full.results = F,
ld.window.kb = 1000, outfile = NULL)
|
markerfile |
Path to markerfile |
snpvec |
Vector of SNPs to include (all others excluded). Optional |
idvec |
Vector of IDs to include (all others excluded). Optional |
full.results |
Default FALSE. If TRUE, prints the table of LD measures between adjacent loci. |
ld.window.kb |
Default 1000. Maximum kb distance between which to measure LD. Higher values will ensure all loci are captured, but will take longer. |
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