estimateQTLEffects: estimateQTLEffects: estimate variance attributed to simulated...
In susjoh/wildsim: Tools for simulating wild populations for Genome-wide Association Studies.
Description
estimateQTLEffects: estimate variance attributed to simulated QTLs
Usage
1
2
estimateQTLEffects(markerfile, phenofile, gwaa.data = NULL, idvec = NULL,
flanking.window, outfile = NULL, merged = F)
Arguments
markerfile
string
phenofile
string
gwaa.data
GenABEL gwaa.data set, optional. If specified, map positions
are taken from here.
idvec
Vector of IDs to include (all others excluded). Optional
flanking.window
integer. Number of SNPs flanking the QTL for
estimation of effect sizes
merged
Boolean, FALSE. If TRUE, include the quantitative trait
nucleotide from the simulation.
susjoh/wildsim documentation built on May 29, 2019, 9:51 a.m.
R Package Documentation
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Description
estimateQTLEffects: estimate variance attributed to simulated QTLs
Usage
1 2 | estimateQTLEffects(markerfile, phenofile, gwaa.data = NULL, idvec = NULL,
flanking.window, outfile = NULL, merged = F)
|
Arguments
markerfile |
string |
phenofile |
string |
gwaa.data |
GenABEL gwaa.data set, optional. If specified, map positions are taken from here. |
idvec |
Vector of IDs to include (all others excluded). Optional |
flanking.window |
integer. Number of SNPs flanking the QTL for estimation of effect sizes |
merged |
Boolean, FALSE. If TRUE, include the quantitative trait nucleotide from the simulation. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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