PlotAndromedaScore: Andromeda score for the best associated MS/MS spectrum.

In svalvaro/MQmetrics: Quality Control of Protemics Data

Description

Andromeda score for the best associated MS/MS spectrum.

Usage

PlotAndromedaScore(
  MQCombined,
  show_median = TRUE,
  size_median = 1.5,
  palette = "Set2",
  plots_per_page = 5
)

Arguments

MQCombined	Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.
show_median	If true it will show the median of each group, as a red dashed line.By default is TRUE.
size_median	The width of the median line in the plots.
palette	The palette from the Package RColorBrewer. By default is 'Set2'.
plots_per_page	Establish the maximum number of plots per page.

Value

Plots the MaxQuant Andromeda Score.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotAndromedaScore(MQCombined)

svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.