PlotTotalIonCurrent: Total Ion Current
In svalvaro/MQmetrics: Quality Control of Protemics Data

Description Usage Arguments Value Examples

Total Ion Current

PlotTotalIonCurrent(
  MQCombined,
  show_max_value = TRUE,
  palette = "Set2",
  plots_per_page = 5
)

`MQCombined`	Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`show_max_value`	If TRUE, it will show the max TIC value of each sample.
`palette`	The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page`	Establish the maximum number of plots per page.

Returns a plot the Total Ion Current in each sample. The maximum value is also plotted.

1
2
3

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotTotalIonCurrent(MQCombined)