PlotPeaks: Total number of peaks detected and sequenced

Description Usage Arguments Value Examples

View source: R/PlotPeaks.R

Description

Total number of peaks detected and sequenced

Usage

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PlotPeaks(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  position_dodge_width = 1,
  palette = "Set2"
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

long_names

If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.

sep_names

If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.

position_dodge_width

Position of the columns within each others.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

Value

Plots the total number of peaks detected in the full scans and the total number of peaks sequenced by tandem MS.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPeaks(MQCombined)

svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.