PlotiRT: Max intensities of the iRT peptides in each sample.

Description Usage Arguments Value Examples

View source: R/PlotiRT.R

Description

Max intensities of the iRT peptides in each sample.

Usage

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PlotiRT(
  MQCombined,
  show_calibrated_rt = FALSE,
  tolerance = 0.001,
  plots_per_page = 5
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

show_calibrated_rt

If TRUE, it will also show the calibrated retention time of each iRT peptide. By default = FALSE.

tolerance

Error maximum to find the iRT peptides by m/z value. by default is 0.001.

plots_per_page

Establish the maximum number of plots per page.

Value

A plot showing the iRT peptide in each sample vs the Retention time.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotiRT(MQCombined)

svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.