PlotPCA: Principal Component Analysis of the Intensity values.

Description Usage Arguments Value Examples

View source: R/PlotPCA.R

Description

Principal Component Analysis of the Intensity values.

Usage

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PlotPCA(MQCombined, intensity_type = "Intensity", palette = "Set2")

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

intensity_type

The type of intensity. Values: 'Intensity' or 'LFQ'.

palette

The palette from the Package RColorBrewer. By default is 'Set2'. Default is Intensity.

Value

A PCA plot of the Intesities of all the samples.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPCA(MQCombined)

svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.