PlotPCA: Principal Component Analysis of the Intensity values.
In svalvaro/MQmetrics: Quality Control of Protemics Data
Description
Usage
Arguments
Value
Examples
Description
Principal Component Analysis of the Intensity values.
Usage
1
Arguments
MQCombined
Object list containing all the files from the MaxQuant
output. It is the result from using make_MQCombined.
intensity_type
The type of intensity. Values: 'Intensity' or 'LFQ'.
palette
The palette from the Package RColorBrewer. By default is
'Set2'.
Default is Intensity.
Value
A PCA plot of the Intesities of all the samples.
Examples
1
2
3
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPCA(MQCombined)
svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.
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Description Usage Arguments Value Examples
Description
Principal Component Analysis of the Intensity values.
Usage
1 |
Arguments
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
intensity_type |
The type of intensity. Values: 'Intensity' or 'LFQ'. |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. Default is Intensity. |
Value
A PCA plot of the Intesities of all the samples.
Examples
1 2 3 | MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPCA(MQCombined)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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