PlotProteaseSpecificity: Protease Specificity

Description Usage Arguments Value Examples

View source: R/PlotProteaseSpecificity.R

Description

Protease Specificity

Usage

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PlotProteaseSpecificity(
  MQCombined,
  palette = "Set2",
  plots_per_page = 5,
  tabular_output = FALSE
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

plots_per_page

Establish the maximum number of plots per page.

tabular_output

If true a table with the information will be the output.

Value

Two plots per sample: Peptide length distribution and the number of missed enzymatic cleavages.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotProteaseSpecificity(MQCombined)

svalvaro/MQmetrics documentation built on Jan. 14, 2022, 6:36 p.m.