is_valid_orf: Check open reading frame validity
In t-arae/bstringr: A package to use a character vector as a biological strings

Check open reading frame validity

1	is_valid_orf(dstrobj, check_stop = FALSE, negate = FALSE)

`dstrobj`	dstr class object or character vector
`check_stop`	If TRUE, check the presence of stop codon.
`negate`	If TRUE, return non-matching elements.

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(test <- dstr(c("ATGtga", "AAGTGA", "ATGGGGTGA", "ATGGGTGA", "ATGGGG","ATGGG")))
is_valid_orf(test)
is_valid_orf(test, check_stop = TRUE)

t-arae/bstringr documentation built on March 18, 2021, 3:08 a.m.

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