dstr_extract_orfs_from_vector: Find open reading frames from Gateway system compatible...

In t-arae/bstringr: A package to use a character vector as a biological strings

Description

Find open reading frames from Gateway system compatible vector

Usage

dstr_extract_orfs_from_vector(dstrobj)

dstr_find_orfs_from_vector(dstrobj)

dstr_translate_from_vector(dstrobj)

Arguments

dstrobj

dstr class object or character vector

Examples

attR1 <- "ACAAGTTTGTACAAAAAAGCTGAAC"
attR2 <- "GTTCAGCTTTCTTGTACAAAGTGGT"
A9 <- "AAAAAAAAA"
dummy <- paste0(A9, attR1, A9, attR2, A9, collapse = "")
dummy2 <- dstr_rev_comp(dummy)
dummy3 <- paste0(dummy, dummy2, collapse = "")
test_distination <- dstr(c(dummy, dummy2, dummy3), paste0("dummy", 1:3))

vectors <-
  dstr_gw_topo("atgtga") %>%
  dstr_gw_lr_both(test_distination)
vectors

dstr_extract_orfs_from_vector(vectors)
dstr_translate_from_vector(vectors)

t-arae/bstringr documentation built on March 18, 2021, 3:08 a.m.