R/InfiniumDiffMetMotR.R

In takahirosuzuki1980/InfiniumDiffMetMotR: Motif Overrepresentation analysis for Illumina Methylation Arrays

#' InfiniumDiffMetMotR.
#' 
#' @name InfiniumDiffMetMotR
#' @docType package
NULL

#' Annotation of InfiniumMethylation450 beadsChip
#' 
#' a dataset containing the annotation of each probe. The variables are as follows:
#' 
#' \itemize{
#' \item IlmnID. probe ID
#' \item Genome_Build. version of genome
#' \item CHR. chromosome
#' \item MAPINFO. coordinate of genome
#' UCSC_RefGene_Group. Annotation against gene
#' Relation_to_UCSC_CpG_Island. Annotation against CpG Island
#' }
#' 
#' @docType data
#' @keywords datasets 450 Methyl450 Infinium annotation
#' @name Methyl450anno
#' @usage data(Methyl450anno)
#' @format A data frame with 486428 rows and 6 variables
NULL

#' Annotation of InfiniumMethylationEPIC beadsChip
#' 
#' a list containing the annotation of each probe. The variables are as follows:
#' 
#' \itemize{
#' \item IlmnID. probe ID
#' \item Genome_Build. version of genome
#' \item CHR. chromosome
#' \item MAPINFO. coordinate of genome
#' UCSC_RefGene_Group. Annotation against gene
#' Relation_to_UCSC_CpG_Island. Annotation against CpG Island
#' }
#' 
#' @docType data
#' @keywords datasets EPIC 850 Infinium annotation
#' @name EPICanno
#' @usage data(EPICanno)
#' @format A data frame with 867531 rows and 6 variables
NULL

#' IMAGE PWM database
#' 
#' a list containing the annotation of each probe. 
#' 
#' @docType data
#' @keywords datasets IMAGE PWM list
#' @name IMAGE_PWMlist
#' @usage data(IMAGE_PWMlist)
#' @format A list with 1611 elements
NULL

#' Annotation of InfiniumMethylationEPIC beadsChip
#' 
#' a list containing the annotation of each probe. The variables are as follows:
#' 
#' \itemize{
#' \item IlmnID. probe ID
#' \item Genome_Build. version of genome
#' \item CHR. chromosome
#' \item MAPINFO. coordinate of genome
#' UCSC_RefGene_Group. Annotation against gene
#' Relation_to_UCSC_CpG_Island. Annotation against CpG Island
#' }
#' 
#' @docType data
#' @keywords datasets EPIC 850 Infinium annotation
#' @name EPICanno
#' @usage data(EPICanno)
#' @format A data frame with 867531 rows and 6 variables
NULL

#' EPIC control database
#' 
#' EPIC control dataset from wateRmelon 
#' 
#' @docType data
#' @keywords wateRmelon EPIC
#' @name epic.controls
#' @usage data(epic.controls)
#' @format 635 abs. of 4 variables
NULL