gpatterns.merge_tidy_cpgs: merge tidy cpgs directories

In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

merge tidy cpgs directories

Description

merge tidy cpgs directories

Usage

gpatterns.merge_tidy_cpgs(
  dirs,
  out_dir = tempdir(),
  nbins = nrow(gintervals.all()),
  paired_end = TRUE,
  stats_dir = paste0(out_dir, "/stats"),
  filter_dups_bin = system.file("import", "filter_dups_cpgs.py", package = "gpatterns")
)

Arguments

dirs	tidy_cpgs directories
out_dir	output directory
nbins	number of genomic bins for output tidy_cpgs
paired_end	is the run paired end
stats_dir	directory for tidy_cpgs stats
filter_dups_bin	binary for filter_dups_cpgs python script

Value

NULL#'

tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.