gpatterns.putative_enhancers: Define putative enhancer regions from chip-seq tracks

In tanaylab/gpatterns: Single Molecule Methylation Patterns Analysis Suite

Define putative enhancer regions from chip-seq tracks

Description

Define putative enhancer regions from chip-seq tracks

Usage

gpatterns.putative_enhancers(
  chip_tracks,
  quant_thresh = 0.999,
  normalize = NULL,
  min_tss_dist = 2000,
  logical_gate = "|"
)

Arguments

chip_tracks	names of chip-seq tracks
quant_thresh	quantile of chip signal that would be considered as peak
normalize	normalize all the regions to have the same size. if NULL no normalization would be done.
min_tss_dist	minimal (absolute) distance from TSS
logical_gate	logical function to combine the different tracks, e.g. '|' or '&'

Value

intervals set with putative enhancers

tanaylab/gpatterns documentation built on May 15, 2023, 6:23 p.m.