Man pages for tangchao7498/ICAS
| ASTypeOfASSJ | ASTypeOfASSJ |
| bbTest | Differential expression using beta-binomial models |
| CountSJ | Count of SJ |
| CumPos | CumPos |
| DiffExpTest | Likelihood ratio test for zero-inflated data |
| DiffTTest | Differential expression testing using Student's t-test |
| FetchMeta | FetchMeta |
| FindAllMarkers | FindAllMarkers SJ expression markers for all identity classes... |
| FindMarkers | FindMarkers |
| GroupBoxplot | GroupBoxplot |
| GroupHeatSpot | GroupHeatSpot |
| HostGeneOfSJ | HostGeneOfSJ |
| ICASDataSet | ICASDataSet object and constructors |
| InternalFunc | These functions are internal function and will not be... |
| MarkerTest | ROC-based marker discovery |
| MASTDETest | Differential expression using MAST |
| methods | show method for ICASDataSet |
| MinMax | Apply a ceiling and floor to all values in a matrix |
| NegBinomDETest | Negative binomial test for UMI-count based data |
| plotgene | plotgene |
| plotSJ | plotSJ |
| PoissonDETest | Poisson test for UMI-count based data |
| PosReadTest | PosReadTest |
| PSICalculater | PSICalculater |
| PSIHeatmap | PSIHeatmap |
| PSIofSJ | PSI of SJ |
| ReadBam | ReadBam |
| SJEvent | AS type and event ID of SJ |
| SJHostGene | Host gene of SJ |
| TobitTest | Differential expression testing using Tobit models |
| varImportances | random forests based marker discovery |
| WilcoxDETest | Differential expression using Wilcoxon Rank Sum |
