GroupHeatSpot: GroupHeatSpot
In tangchao7498/ICAS:

GroupHeatSpot

GroupHeatSpot(object, SJ, flank = 200, cells = NULL, BamFiles,
  BamPostfix, logTrans = FALSE, ignore.strand = TRUE,
  ignore.SEorPE = FALSE, singleEnd = FALSE, antisense = TRUE,
  strandMode = 2, mapqFilter = 0, geneModul, shrinkage = 1,
  high.col = "#0000FF80", low.col = "#FFFF0080", curvature = -0.1,
  reduce = FALSE, rel_heights = c(1, 1, 1, 1),
  highlight.region = NULL, highlight.color = "#0000FF80",
  highlight.label = NULL, highlight.label.size = 4,
  removeTxid = FALSE, MinimumFractionForP = 0.05, NT = 1, ...)

`object`	an ICASDataSet
`SJ`	a charactor of SJ
`flank`	the distance of flanking extension
`cells`	which cells are output, NULL for all cells
`BamFiles`	a file list of bamfiles
`BamPostfix`	the postfix of bam files, remove the postfix the base name of bam must consistent with cells name
`logTrans`	whether to perform log1p for the depth
`ignore.strand`	the strandedness of bam file
`ignore.SEorPE`	ignore single end paired of bamfiles (if your bam files have single end and paired end at the same time, you need to ignore the SEorPE)
`singleEnd`	singleEnd or paired end of bam
`antisense`	strandedness for singleEnd
`strandMode`	strandMode for readGAlignments
`mapqFilter`	A non-negative integer(1) specifying the minimum mapping quality to include. BAM records with mapping qualities less than mapqFilter are discarded.
`geneModul`	A TxDb object made from GTF used by BAM aligner or a GRangesList object
`shrinkage`	the shrinkage for intron region (must be a positive >= 1). default 1 for no shrinkage
`high.col`	the color for high expressed base
`low.col`	the color for low expressed base
`curvature`	the curvature for splice junction
`reduce`	To collapse all gene structure annotation features or not
`rel_heights`	The relative heights of each row in the grid (must be a vector with 4 numbers).
`highlight.region`	the region to highlight
`highlight.color`	the color of highlight.region
`highlight.label`	the label of highlight.region
`highlight.label.size`	the size of highlight region label
`removeTxid`	logical value, indicating whether to remove the transcript of y axis lab
`MinimumFractionForP`	The minimum fraction of scaled expression to calculate base pair waldtest P value
`NT`	the cores for parallel