InternalFunc: These functions are internal function and will not be...

In tangchao7498/ICAS:

Description

These functions are internal function and will not be exported

Usage

ReadSTARSJ(file, uniqMapOnly = TRUE, minSJRead = 1,
  annotationOnly = TRUE, minOverhang = 3)

multiMerge(SJFiles, uniqMapOnly = TRUE, minSJRead = 1,
  minSJRowSum = 10, minSJSample = 2, annotationOnly = TRUE,
  minOverhang = 3, postfix = "SJ.out.tab")

ASSJFind(x)

ASSJFilter(matrix, MMJF)

fun1(x, MinSum)

SetIfNull(x, default)

WhichCells(object, ident)

Arguments

x	An object to set if it's null
default	The value to provide if x is null
object	An object to set if it's null
ident	one level of design
MMF	minimum minor-junction fraction of multiple-alternative-splice site (same start/end junction > 2)
MinSumSpliceSite	The minimum number of reads of each SameStart or SameEnd for PSI Calculating

Value

default if x is null, else x

tangchao7498/ICAS documentation built on Jan. 28, 2021, 3:56 p.m.