NegBinomDETest: Negative binomial test for UMI-count based data

In tangchao7498/ICAS:

Description

Identifies differentially expressed SJs between two groups of cells using a negative binomial generalized linear model

Usage

NegBinomDETest(object, cells.1, cells.2, genes.use = NULL,
  print.bar = TRUE, min.cells = 3, NT = 1)

Arguments

object	ICASDataSet object
cells.1	Group 1 cells
cells.2	Group 2 cells
genes.use	SJs to use for test
print.bar	Print progress bar
min.cells	Minimum number of cells threshold

Value

Returns a p-value ranked matrix of putative differentially expressed SJs.

tangchao7498/ICAS documentation built on Jan. 28, 2021, 3:56 p.m.