PoissonDETest: Poisson test for UMI-count based data

In tangchao7498/ICAS:

Description

Identifies differentially expressed SJs between two groups of cells using a poisson generalized linear model

Usage

PoissonDETest(object, cells.1, cells.2, min.cells = 3,
  genes.use = NULL, print.bar = TRUE, NT = 1)

Arguments

object	ICASDataSet object
cells.1	Group 1 cells
cells.2	Group 2 cells
min.cells	Minimum number of cells expressing the SJ in at least one of the two groups
genes.use	SJs to use for test
print.bar	Print progress bar
latent.vars	Latent variables to test

Value

Returns a p-value ranked matrix of putative differentially expressed SJs.

tangchao7498/ICAS documentation built on Jan. 28, 2021, 3:56 p.m.