TobitTest: Differential expression testing using Tobit models

In tangchao7498/ICAS:

Description

Identifies differentially expressed SJs between two groups of cells using Tobit models, as proposed in Trapnell et al., Nature Biotechnology, 2014

Usage

TobitTest(object, cells.1, cells.2, genes.use = NULL, print.bar = TRUE,
  NT = 1)

Arguments

object	ICASDataSet object
cells.1	Group 1 cells
cells.2	Group 2 cells
genes.use	SJs to test. Default is to use all SJs
print.bar	Print a progress bar once expression testing begins (uses pbapply to do this)
NT	cores for parallel (Currently only support roc test)

Value

Returns a p-value ranked matrix of putative differentially expressed SJs.

tangchao7498/ICAS documentation built on Jan. 28, 2021, 3:56 p.m.